This post may contain affiliate links.
A few weeks ago, I made the mistake of baking these Orange Poppy Seed Muffins for Saturday breakfast—and let’s just say, my kids haven’t let me forget it since. I’ve created a monster! If you decide to bake them, be prepared: these muffins are the kind that make your family expect them every weekend.
They have that perfect bakery-style look and texture, with a high dome and a delicate crumb. While I’m a fan of jumbo muffins, this recipe can easily be adapted for a standard muffin tin – no need to buy any new baking equipment. Just follow the initial bake time and adjust the second bake for a slightly shorter time.
And here’s a little secret: I always keep a batch of these in the freezer. Whether it’s for surprise brunch guests or a quick, cozy snack, having homemade muffins on hand is a lifesaver. Ready to bake a batch of these irresistible muffins?

Table of Contents
😍 Why You’ll Love These Orange Poppy Seed Muffins
These muffins are the kind of recipe you’ll find yourself making time and again. With the bright zing of orange and the slight crunch from the poppy seeds, they offer a refreshing twist on your classic muffin. They’re also gluten-free and dairy-free, so everyone can enjoy them without worry.
Perfect for a weekend breakfast or as a treat to keep on hand in the freezer, they’re both simple to make and surprisingly versatile. Plus, with their high domed tops and light, tender crumb, they look just as good as they taste.

🗒️ Ingredients
Gluten-Free All-Purpose Flour: The base for a light, airy texture, ensuring these muffins stay soft and tender.
Kosher Salt: Just the right amount to balance the sweetness and bring out the flavor of the orange.
Baking Soda & Baking Powder: A dynamic duo to give these muffins the perfect rise and texture.
Poppy Seeds: A little crunch and a lot of character, adding a lovely pop to each bite.
Eggs: They bind everything together while keeping the muffins moist and fluffy.
Granulated Sugar: Sweetness that complements the citrus without overpowering it.
Orange Zest: The bright, fragrant kick that gives these muffins their fresh, zesty flavor.
Orange Juice: Adds a burst of natural sweetness and a touch of citrusy tang.
Unsweetened Almond Milk: A dairy-free choice that keeps the muffins moist without affecting the flavor.
Olive Oil: A smooth, neutral oil that helps create a tender crumb while adding richness.

👩🍳 How to Make These Orange Poppy Seed Muffins
🔥 Preheat the oven to 425°F and line a jumbo muffin tin with paper liners. Spray the liners with nonstick baking spray for easy removal.
🥣 In a medium bowl, whisk together the gluten-free flour, salt, baking soda, baking powder, and poppy seeds until well combined.
🥚 In a separate bowl, whisk the eggs and sugar for about 30 seconds. Then add the orange zest, orange juice, almond milk, and olive oil, whisking until fully combined.
🥄 Add the dry ingredients to the wet ingredients and gently whisk until just incorporated, with no visible flour.
✋🏻 Let the batter rest for 15 minutes to help it puff up.
🍦 Using an ice cream scoop, fill each muffin cup almost to the top (about ½ inch from the edge). Bake for 5 minutes at 425°F.
🔥 Lower the temperature to 350°F and bake for an additional 28-32 minutes, or until a toothpick comes out clean. If you’re using a standard muffin tin, bake for 20-24 minutes.
⏲️ Once done, let the muffins sit in the pan for 10 minutes, then carefully run a knife around the edges and turn them out onto a cooling rack to cool completely.
🥳 Serve warm or freeze for later.

🎩 Tips and Tricks
Let the batter rest: This is key to getting those high, bakery-style domes. Letting the batter sit for 15 minutes helps the gluten-free flour hydrate and results in a fluffier texture.
Fill each cup generously, almost to the top: I like to leave about half an inch at the top of my muffin cups for reference!
Start with high heat: Baking at 425°F for the first few minutes encourages the muffins to rise quickly, creating that perfect dome shape. Make sure you lower the temperature to 350°F to finish baking.
Test for doneness: Since oven temperatures can vary, be sure to test your muffins with a toothpick or cake tester. If it comes out clean or with just a few crumbs, they’re done.

🌟 Variations
- If you’re craving a different citrus twist, substitute the orange zest and juice for lemon or lime. You’ll still get that refreshing zing but with a new flavor profile.
- Fresh or frozen berries like blueberries or raspberries pair beautifully with the citrus flavor. Just fold them in gently before baking.
- For a little crunch, try adding chopped walnuts or almonds to the batter. They’ll add texture and a nutty flavor that complements the poppy seeds.

🤲 Substitutions
- Gluten-Free Flour: You can substitute with regular all-purpose flour if you’re not following a gluten-free diet. For a grain-free version, try almond flour (though the texture might be a bit denser).
- Almond Milk: Any milk will work here—whole, skim, or plant-based like oat or soy milk.
- Olive Oil: Vegetable oil, sunflower oil, or canola oil can be used instead of olive oil for a milder flavor.
- Granulated Sugar: You can use coconut sugar for a more caramel-like flavor.
- Eggs: If you’re looking for an egg-free version, try using a flax egg (1 tablespoon ground flaxseed + 2.5 tablespoons water, mixed and allowed to sit for 5 minutes) or chia seeds for a similar binding effect.
- Orange Zest/Orange Juice: Lemon zest and lemon juice make a lovely substitution for a different citrus flavor. You can also try lime for a tropical twist.
- Poppy Seeds: If you don’t have poppy seeds, chia seeds can work in a pinch for a similar texture and slight crunch, though the flavor will be different.

📓 Best served with
- Fresh fruit
- Greek yogurt
- Tea or coffee
- Jam or preserves

👝 How to Store Leftover Orange Poppy Seed Muffins
To store leftovers, allow the muffins to cool completely before placing them in an airtight container at room temperature for up to 3 days. For longer storage, wrap the muffins individually in plastic wrap or foil and freeze them for up to 3 months. When you’re ready to enjoy, simply thaw them at room temperature or warm them in the oven for a few minutes to refresh their texture.

🧠 Common Questions
Yes, you can bake the muffins ahead of time and store them in an airtight container at room temperature for up to 3 days. For longer storage, freeze them and thaw as needed.
Yes, you can swap in regular all-purpose flour if you don’t need them to be gluten-free. The texture will remain the same.
Yes! This recipe is already dairy-free, as it uses almond milk and olive oil in place of dairy products.
Yes, you can use a mini muffin tin. Just reduce the baking time to about 15-18 minutes, or until a toothpick comes out clean.
Definitely! You can add fresh or frozen berries, chopped nuts, or even coconut flakes for a fun twist. Just fold them in gently before baking.

Bakery-Style Orange Poppy Seed Muffins
Ingredients
- 2 cups Gluten-Free all-purpose flour blend
- 1 teaspoon Kosher salt
- 1/2 teaspoon baking soda
- 1 teaspoon baking powder
- 2 tablespoons poppy seeds
- 3 large eggs
- ¾ cup granulated sugar
- 1 1/2 tablespoons grated orange zest, from 2 oranges
- ⅓ cup fresh orange juice, from 2 oranges
- 1 cup unsweetened almond milk
- ¾ cup olive oil
Instructions
- Preheat the oven to 425 degrees F.
- Line a jumbo muffin tin with paper liners and spray with nonstick baking spray. If you don’t have liners, just spray the cavities very well with a baker’s spray like Baker’s Joy. Set aside.
- In a medium bowl, whisk together the flour, salt, baking soda, baking powder, and poppy seeds with a fork.
- In a separate bowl whisk the eggs and sugar for 30 seconds, then add zest and juice, milk, and oil and whisk to combine.
- Add the dry ingredients to the wet ingredients and whisk just until there are no more traces of flour.
- Let the batter rest for 15 minutes.
- Using an ice cream scoop to make it easy, transfer the batter into the prepared pan, filling to ½ inch from the top of each cavity and bake for 5 minutes.
- Lower the temperature to 350 Degrees F and bake for another 28-32 minutes or until they are baked through and a tester comes out just clean. (If you’re making standard muffins, bake for 20-24 minutes more or until baked through.)
- Let the muffins sit in the pan for 10 minutes before gently running a knife around the tops of the muffins and turning them out onto a cooling rack to cool completely.
- Serve right away, or freeze for later.
Nutrition
Nutrition information is automatically calculated, so should only be used as an approximation.



Haven’t made yet, can I swap oat for almond milk? Allergic to nuts
hello… love love love and want to prep for christmas.. any tips on freezing them? take out of liner? leave in liner.. freeze in freezer bag? freeze on sheet pan first then add to bag?
re -heat? defrost on counter? fridge?
sorry all the things i just want them to be as good when i take them out of the freezer 🙂
thank you so much!!!!
Hi Beth! I’m so glad you love this recipe as much as I do!
Some thoughts for you:
– I like to take the liner off when freezing them because it avoids any soggy-liners during the defrost phase
– I prefer defrosting them in the fridge for a more gentle defrost, but on the counter also works.
– Reheat them only once they’ve defrosted fully if you’d like to enjoy them warm!
Hopefully this helps!
Kat.
Hi Kat!
Thanks for the recipe! Looks yummy! My kiddo is also egg free. Ever made with egg replacement? Flax? Any suggestions?
With appreciation,
Sam
Hi Sam,
Flax seed or even applesauce should work here!
Let me know if you give it a try!
Kat.
I baked mini muffins for just 8 minutes after the initial 5 minutes and they were perfect.
Amazing, Diane! And thank you for sharing – I know others will want to know this!
Enjoy,
Kat.
Love them!! Any suggestion on what to use if I am looking to substitute the sugar for a better option? Maybe applesauce. What would you suggest in and how much?
Hi Austin,
I haven’t tried with any alternatives to sugar in this recipe – I have heard people use coconut sugar as a healthier option but can’t comment from personal experience. Applesauce may work but it may not be sweet enough depending on your tastes. Perhaps a little experimentation is in order!
Let me know how you get on!
Kat.
I used Monk Sweetener and they turned out delicious
Thank you for sharing, Hal!
Kat.
Easy and delicious! The texture was perfect. Don’t skip resting the batter. It makes all the difference in hydrating the flour. I followed the recipe to a tee except I used bakers sugar (slightly finer than regular granulated sugar) and I massaged the orange zest into the sugar before mixing with the eggs. This recipe will definitely become a staple for my family. Might try making an orange glaze to drizzle on top next time. My advice, make them stat!
I love that you love these Crystal! And massaging the orange zest in the sugar – genuis!!
Enjoy,
Kat.
Can’t wait to make these ASAP! Are the 57 carbs per muffin? Also, love Modere!!!! Thanks for recommending this top notch collagen!
Please let me know if you give them a try – these muffins are a staple in my house! Yes, that’s a rough estimate per muffin, but of course, they’re jumbo so you could always make them with a regular-sized muffin tray.
And I’m thrilled you like Modere!
Enjoy,
Kat.
Made these this morning with buttermilk, 1/2 paleo flour and added a little lemon zest–they were delicious!
So thrilled that you loved them Teghan!
Enjoy,
Kat
Hi! I gave this recipe 5 stars because I’m sure it deserves it. I will be making these very soon. We have been experimenting with gluten free recipes recently. Our son was diagnosed with celiac disease. So, having wonderful recipes to prepare for him when he visits, is so wonderful.
The real reason I’m posting is, that you mentioned in one of your TikTok videos that you were experimenting with making your own gluten free flour blend. Have you been able to perfect it yet? If so, will you share the recipe? Baked goods are so hard to make that don’t have a grainy texture to them. I have some of the Bob’s Red Mill 1:1 that you have suggested. I will try that one for this recipe.
I love all of your recipes. And your suggestions for preserving produce is such a money saver! Thank you for sharing so much wonderful knowledge with us.
Cindy
Hi Cindy,
You’re so kind! I’m so glad you’re here!
The gluten free bread recipe is coming in my cook book – it truly was a labor of love (3 years of testing!) and I can’t wait for you to get your hands on it. Bob’s Red Mill 1:1 is my go-to gluten free flour and will work in most recipes, so a perfect thing to have on hand for baking with your son!
Let me know if you have any questions, I’m always here to help.
Kat.
So good! I made these while taking care of my mom after surgery. They were a big hit. My oranges had so much juice I was afraid to add the almond milk because the batter seemed to have enough liquid. Warm with butter the poppy seeds and orange flavor were perfect. Sophisticated and delicious.